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1

Altricial-precocial spectra in animal kingdom

Augustine, Starrlight, Lika, Konstadia, Kooijman, Sebastiaan A.L.M.

Journal:

Journal of Sea Research

Year:

2018

Language:

english

File:

PDF, 2.08 MB

english, 2018

2

Comparing loss functions and interval estimates for survival data

Augustine, Starrlight, Lika, Konstadia, Kooijman, Sebastiaan A.L.M.

Journal:

Ecological Modelling

Year:

2020

File:

PDF, 913 KB

2020

3

A biology-based approach for quantitative structure-activity relationships (QSARs) in ecotoxicity

Tjalling Jager, Sebastiaan A. L. M. Kooijman

Journal:

Year:

2009

Language:

english

File:

PDF, 300 KB

english, 2009

4

Physiological performance of plaice Pleuronectes platessa (L.): A comparison of static and dynamic energy budgets

Henk W. van der Veer, Joana F.M.F. Cardoso, Myron A. Peck, Sebastiaan A.L.M. Kooijman

Journal:

Journal of Sea Research

Year:

2009

Language:

english

File:

PDF, 637 KB

english, 2009

5

Carbon and nitrogen fluxes in decomposing leaf litter with microbial-detritivore interactions: model simulations compared to microcosm ecotoxicity tests

Joke Van Wensem, Nico M. Van Straalen, Sebastiaan A.L.M. Kooijman

Journal:

Ecological Modelling

Year:

1997

Language:

english

File:

PDF, 1.12 MB

english, 1997

6

Homeostasis and the fuelling of metabolism

Kooijman, Sebastiaan A.L.M.

Journal:

Physics of Life Reviews

Year:

2016

Language:

english

File:

PDF, 247 KB

english, 2016

7

The standard dynamic energy budget model has no plausible alternatives

Kooijman, Sebastiaan A.L.M.

Journal:

Ecological Modelling

Year:

2020

File:

PDF, 251 KB

2020

8

Two parameters account for the flocculated growth of microbes in biodegradation assays

Bernd W. Brandt, Sebastiaan A. L. M. Kooijman

Journal:

Biotechnology and Bioengineering

Year:

2000

Language:

english

File:

PDF, 164 KB

english, 2000

9

Using a biology-based model (DEBtox) to analyze bioassays in ecotoxicology: Opportunities and recommendations

Alexandre R. R. Péry, Patrick Flammarion, Bernard Vollat, Jacques J. M. Bedaux, Sebastiaan A. L. M. Kooijman, Jeanne Garric

Journal:

Environmental Toxicology and Chemistry

Year:

2002

Language:

english

File:

PDF, 80 KB

english, 2002

10

A kinetic inhibition mechanism for maintenance

Caroline Tolla, Sebastiaan A.L.M. Kooijman, Jean-Christophe Poggiale

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 375 KB

english, 2007

11

Dynamic energy budgets in syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts

Erik B. Muller, Sebastiaan A.L.M. Kooijman, Peter J. Edmunds, Francis J. Doyle, Roger M. Nisbet

Journal:

Journal of Theoretical Biology

Year:

2009

Language:

english

File:

PDF, 967 KB

english, 2009

12

Life history implications of allocation to growth versus reproduction in dynamic energy budgets

Konstadia Lika, Sebastiaan A.L.M Kooijman

Journal:

Bulletin of Mathematical Biology

Year:

2003

Language:

english

File:

PDF, 349 KB

english, 2003

13

Dimethyl sulfide emissions from a sedimental microbial ecosystem subject to diel variations of oxic and anoxic conditions: a simple mathematical model

Hugo A. van den Berg, Henk M. Jonkers, Stef A. van Bergeijk, Sebastiaan A.L.M. Kooijman

Journal:

FEMS Microbiology Ecology

Year:

1998

Language:

english

File:

PDF, 1.30 MB

english, 1998

14

Stoichiometric food quality and herbivore dynamics

Erik B. Muller, Roger M. Nisbet, Sebastiaan A. L. M. Kooijman, James J. Elser, Edward McCauley

Journal:

Ecology Letters

Year:

2001

Language:

english

File:

PDF, 658 KB

english, 2001

15

Making Sense of Ecotoxicological Test Results: Towards Application of Process-based Models

Tjalling Jager, Evelyn H. W. Heugens, Sebastiaan A. L. M. Kooijman

Journal:

Year:

2006

Language:

english

File:

PDF, 228 KB

english, 2006

16

A biology-based approach for mixture toxicity of multiple endpoints over the life cycle

Tjalling Jager, Tine Vandenbrouck, Jan Baas, Wim M. De Coen, Sebastiaan A. L. M. Kooijman

Journal:

Year:

2010

Language:

english

File:

PDF, 394 KB

english, 2010

17

Dimethyl sulfide emissions from a sedimental microbial ecosystem subject to diel variations of oxic and anoxic conditions: a simple mathematical model

Hugo A. van den Berg, Henk M. Jonkers, Stef A. van Bergeijk, Sebastiaan A.L.M. Kooijman

Journal:

FEMS Microbiology Ecology

Year:

1998

Language:

english

File:

PDF, 1.24 MB

english, 1998

18

Modeling the effects of binary mixtures on survival in time

Jan Baas, Bart P. P. van Houte, Cornelis A. M. van Gestel, Sebastiaan A. L. M. Kooijman

Journal:

Environmental Toxicology and Chemistry

Year:

2007

Language:

english

File:

PDF, 426 KB

english, 2007

19

From Static Energy Budgets (SEB) to Dynamic Energy Budgets (DEB), linking physiology and ecology, illustrated for plaice Pleuronectes platessa (L.)

Henk W. van der Veer, Joana F.M.F. Cardoso, Sebastiaan A.L.M. Kooijman

Journal:

Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology

Year:

2009

Language:

english

File:

PDF, 58 KB

english, 2009

20

Dynamic energy budgets of syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts

Erik B. Muller, Francis J. Doyle, Roger M. Nisbet, Peter Edmunds, Sebastiaan Kooijman

Journal:

Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology

Year:

2009

Language:

english

File:

PDF, 92 KB

english, 2009

21

Model-based experimental design for assessing effects of mixtures of chemicals

Jan Baas, Anna M. Stefanowicz, Beata Klimek, Ryszard Laskowski, Sebastiaan A.L.M. Kooijman

Journal:

Environmental Pollution

Year:

2010

Language:

english

File:

PDF, 249 KB

english, 2010

22

Omnivory and food web dynamics

Lothar D.J. Kuijper, Bob W. Kooi, Cor Zonneveld, Sebastiaan A.L.M. Kooijman

Journal:

Ecological Modelling

Year:

2003

Language:

english

File:

PDF, 299 KB

english, 2003

23

Effects of uranium on the metabolism of zebrafish, Danio rerio

Starrlight Augustine, Béatrice Gagnaire, Christelle Adam-Guillermin, Sebastiaan A.L.M. Kooijman

Journal:

Aquatic Toxicology

Year:

2012

Language:

english

File:

PDF, 2.01 MB

english, 2012

24

The trade-off between maturation and growth during accelerated development in frogs

Casey A. Mueller, Starrlight Augustine, Sebastiaan A.L.M. Kooijman, Michael R. Kearney, Roger S. Seymour

Journal:

Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology

Year:

2012

Language:

english

File:

PDF, 515 KB

english, 2012

25

Chronic exposure to chlorpyrifos reveals two modes of action in the springtail Folsomia candida

Tjalling Jager, Trudie Crommentuijn, Cornelis A.M. van Gestel, Sebastiaan A.L.M. Kooijman

Journal:

Environmental Pollution

Year:

2007

Language:

english

File:

PDF, 206 KB

english, 2007

26

When do mixotrophs specialize? Adaptive dynamics theory applied to a dynamic energy budget model

Tineke A. Troost, Bob W. Kooi, Sebastiaan A.L.M. Kooijman

Journal:

Mathematical Biosciences

Year:

2005

Language:

english

File:

PDF, 505 KB

english, 2005

27

Body size scaling relationships in flatfish as predicted by Dynamic Energy Budgets (DEB theory): implications for recruitment

Henk W van der Veer, Sebastiaan A.L.M Kooijman, Jaap van der Meer

Journal:

Journal of Sea Research

Year:

2003

Language:

english

File:

PDF, 427 KB

english, 2003

28

Body-size scaling relationships in bivalve species: A comparison of field data with predictions by the Dynamic Energy Budget (DEB) theory

Joana F.M.F. Cardoso, Henk W. van der Veer, Sebastiaan A.L.M. Kooijman

Journal:

Journal of Sea Research

Year:

2006

Language:

english

File:

PDF, 487 KB

english, 2006

29

Modeling fish growth and reproduction in the context of the Dynamic Energy Budget theory to predict environmental impact on anchovy spawning duration

Laure Pecquerie, Pierre Petitgas, Sebastiaan A.L.M. Kooijman

Journal:

Journal of Sea Research

Year:

2009

Language:

english

File:

PDF, 624 KB

english, 2009

30

Contribution of different generations of the brown shrimp Crangon crangon (L.) in the Dutch Wadden Sea to commercial fisheries: A dynamic energy budget approach

Joana Campos, Henk W. Van der Veer, Vânia Freitas, Sebastiaan A.L.M. Kooijman

Journal:

Journal of Sea Research

Year:

2009

Language:

english

File:

PDF, 377 KB

english, 2009

31

A quantitative estimation of the energetic cost of brown ring disease in the Manila clam using Dynamic Energy Budget theory

Jonathan Flye-Sainte-Marie, Fred Jean, Christine Paillard, Sebastiaan A.L.M. Kooijman

Journal:

Journal of Sea Research

Year:

2009

Language:

english

File:

PDF, 387 KB

english, 2009

32

Reconstruction of food conditions for Northeast Atlantic bivalve species based on Dynamic Energy Budgets

Vânia Freitas, Joana F.M.F. Cardoso, Sílvia Santos, Joana Campos, Jan Drent, Sofia Saraiva, Johannes IJ. Witte, Sebastiaan A.L.M. Kooijman, Henk W. Van der Veer

Journal:

Journal of Sea Research

Year:

2009

Language:

english

File:

PDF, 509 KB

english, 2009

33

The AquaDEB project (phase I): Analysing the physiological flexibility of aquatic species and connecting physiological diversity to ecological and evolutionary processes by using Dynamic Energy Budgets

Marianne Alunno-Bruscia, Henk W. van der Veer, Sebastiaan A.L.M. Kooijman

Journal:

Journal of Sea Research

Year:

2009

Language:

english

File:

PDF, 141 KB

english, 2009

34

The “covariation method” for estimating the parameters of the standard Dynamic Energy Budget model II: Properties and preliminary patterns

Konstadia Lika, Michael R. Kearney, Sebastiaan A.L.M. Kooijman

Journal:

Journal of Sea Research

Year:

2011

Language:

english

File:

PDF, 998 KB

english, 2011

35

The comparative topology of energy allocation in budget models

Konstadia Lika, Sebastiaan A.L.M. Kooijman

Journal:

Journal of Sea Research

Year:

2011

Language:

english

File:

PDF, 572 KB

english, 2011

36

The “covariation method” for estimating the parameters of the standard Dynamic Energy Budget model I: Philosophy and approach

Konstadia Lika, Michael R. Kearney, Vânia Freitas, Henk W. van der Veer, Jaap van der Meer, Johannes W.M. Wijsman, Laure Pecquerie, Sebastiaan A.L.M. Kooijman

Journal:

Journal of Sea Research

Year:

2011

Language:

english

File:

PDF, 395 KB

english, 2011

37

The AquaDEB project: Physiological flexibility of aquatic animals analysed with a generic dynamic energy budget model (phase II)

Marianne Alunno-Bruscia, Henk W. van der Veer, Sebastiaan A.L.M. Kooijman

Journal:

Journal of Sea Research

Year:

2011

Language:

english

File:

PDF, 217 KB

english, 2011

38

A general model for multiple substrate biodegradation. Application to co-metabolism of structurally non-analogous compounds

Bernd W. Brandt, Ingeborg M.M. van Leeuwen, Sebastiaan A.L.M. Kooijman

Journal:

Year:

2003

Language:

english

File:

PDF, 246 KB

english, 2003

39

Modelling microbial adaptation to changing availability of substrates

Bernd W. Brandt, Fleur D.L. Kelpin, Ingeborg M.M. van Leeuwen, Sebastiaan A.L.M. Kooijman

Journal:

Year:

2004

Language:

english

File:

PDF, 280 KB

english, 2004

40

The role of intracellular components in food chain dynamics

Paul P.F. Hanegraaf, Bob W. Kooi, Sebastiaan A.L.M. Kooijman

Journal:

Comptes Rendus de l'Académie des Sciences - Series III - Sciences de la Vie

Year:

2000

Language:

french

File:

PDF, 324 KB

french, 2000

41

Intra- and interspecies comparison of energy flow in North Atlantic flatfish species by means of dynamic energy budgets

Henk W van der Veer, Sebastiaan A.L.M Kooijman, Jaap van der Meer

Journal:

Journal of Sea Research

Year:

2001

Language:

english

File:

PDF, 264 KB

english, 2001

42

Analyzing variations in life-history traits of Pacific salmon in the context of Dynamic Energy Budget (DEB) theory

Laure Pecquerie, Leah R. Johnson, Sebastiaan A.L.M. Kooijman, Roger M. Nisbet

Journal:

Journal of Sea Research

Year:

2011

Language:

english

File:

PDF, 727 KB

english, 2011

43

Stoichiometry and food-chain dynamics

Lothar D.J. Kuijper, Bob W. Kooi, Thomas R. Anderson, Sebastiaan A.L.M. Kooijman

Journal:

Theoretical Population Biology

Year:

2004

Language:

english

File:

PDF, 424 KB

english, 2004

44

Balancing heat, water and nutrients under environmental change: a thermodynamic niche framework

Kearney, Michael R., Simpson, Stephen J., Raubenheimer, David, Kooijman, Sebastiaan A. L. M., Chown, Steven

Journal:

Functional Ecology

Year:

2013

Language:

english

File:

PDF, 1.59 MB

english, 2013

45

A Manipulative Test of Competing Theories for Metabolic Scaling.

Craig R. White, Michael R. Kearney, Philip G. D. Matthews, Sebastiaan A. L. M. Kooijman, and Dustin J. Marshall

Journal:

American Naturalist

Year:

2011

Language:

english

File:

PDF, 389 KB

english, 2011

46

Reconciling theories for metabolic scaling

Maino, James L., Kearney, Michael R., Nisbet, Roger M., Kooijman, Sebastiaan A. L. M., Humphries, Murray

Journal:

Journal of Animal Ecology

Year:

2014

Language:

english

File:

PDF, 299 KB

english, 2014

47

Comparative energetics of the 5 fish classes on the basis of dynamic energy budgets

Kooijman, Sebastiaan A.L.M., Lika, Konstadia

Journal:

Journal of Sea Research

Year:

2014

Language:

english

File:

PDF, 1.74 MB

english, 2014

48

Feeding and energetics of the great scallop, Pecten maximus, through a DEB model

Lavaud, Romain, Flye-Sainte-Marie, Jonathan, Jean, Fred, Emmery, Antoine, Strand, Øivind, Kooijman, Sebastiaan A.L.M.

Journal:

Journal of Sea Research

Year:

2014

Language:

english

File:

PDF, 1.96 MB

english, 2014

49

Metabolic acceleration in Mediterranean Perciformes

Lika, Konstadia, Kooijman, Sebastiaan A.L.M., Papandroulakis, Nikos

Journal:

Journal of Sea Research

Year:

2014

Language:

english

File:

PDF, 1.74 MB

english, 2014

50

The bijection from data to parameter space with the standard DEB model quantifies the supply–demand spectrum

Lika, Konstadia, Augustine, Starrlight, Pecquerie, Laure, Kooijman, Sebastiaan A.L.M.

Journal:

Journal of Theoretical Biology

Year:

2014

Language:

english

File:

PDF, 879 KB

english, 2014